| gene list |
| gene with full coding exonic regions |
ABL1,ACVR1B,AKT1,AKT2,AKT3,ALK,ALOX12B,AMER1(FAM123B),APC,
AR,ARAF,ARFRP1,ARID1A,ASXL1,ATM,ATR,ATRX,AURKA,
AURKB,AXIN1,AXL,BAP1,BARD1,BCL2,BCL2L1,BCL2L2,BCL6,
BCOR,BCORL1,BRAF,BRCA1,BRCA2,BRD4,BRIP1,BTG1,BTG2,
BTK,C11orf30(EMSY),CALR,CARD11,CASP8,CBFB,CBL,CCND1,CCND2,
CCND3,CCNE1,CD22,CD274(PD-L1),CD70,CD79A,CD79B,CDC73,CDH1,
CDK12,CDK4,CDK6,CDK8,CDKN1A,CDKN1B,CDK2A,CDKN2B,CDKN2C,
CEBPA,CHEK1,CHEK2,CIC,CREBBP,CRKL,CSF1R,CSF3R,CTCF,
CTNNA1,CTNNB1,CUL3,CUL4A,CXCR4,CYP17A1,DAXX,DDR1,DDR2,
DIS3,DNMT3A,DOT1L,EED,EGFR,EP300,EPHA3,EPHB1,EPHB4,
ERBB2,ERBB3,ERBB4,ERCC4,ERG,ERRFI1,ESR1,EZH2,FAM46C,
FANCA,FANCC,FANCG,FANCL,FAS,FBXW7,FGFR2,FGFR3,FGFR4,
FGF19,FGF23,FGF3,FGF4,FGF6,FGFR1,FGFR2,FGFR3,FGFR4,
FH,FLCN,FLT1,FLT3,FOXL2,FUBP1,GABRA6,GATA3,GATA4,
GATA6,GID4(C17orf39),GNA11,GNA13,GNAQ,GNAS,GRM3,GSK3B,H3F3A,
HDAC1,HGF,HNF1A,HRAS,HSD3B1,ID3,IDH1,IDH2,IGF1R,
IKBKE,IKZF1,INPP4B,IRF2,IRF4,IRS2,JAK1,JAK2,JAK3,
JUN,KDM5A,KDM5C,KDM6A,KDR,KEAP1,KEL,KIT,KLHL6,
KMT2A(MLL),KMT2D(MLL2),KRAS,LTK,LYN,MAF,MAP2K1(MEK1),MAP2K2(MEK2),MAP2K4,
MAP3K1,MAP3K13,MAPK1,MCL1,MDM2,MDM4,MED12,MEF2B,MEN1,
MERTK,MET,MITF,MKNK1,MLH1,MPL,MRE11A,MSH2,MSH3,
MSH6,MST1R,MTAP,MTOR,MUTYH,MYC,MYCL(MYCL1),MYCN,MYD88,
NBN,NF1,NF2,NFE2L2,NFKBIA,NKX2-1,NOTCH1,NOTCH2,NOTCH3,
NPM1,NRAS,NT5C2,NTRK1,NTRK2,NTRK3,P2RY8,PALB2,PARK2,
PARP1,PARP2,PARP3,PAX5,PBRM1,PDCD1(PD-1),PDCD1LG2(PD-L2),PDGFRA,PDGFRB,
PDK1,PIK3C2B,PIK3C2G,PIK3CA,PIK3CB,PIK3R1,PIM1,PMS2,POLD1,
POLE,PPARG,PPP2R1A,PPP2R2A,PRDM1,PRKAR1A,PRKCI,PTCH1,PTEN,
PTPN11,PTPRO,QKI,RAC1,RAD21,RAD51,RAD51B,RAD51C,RAD51D,
RAD52,RAD54L,RAF1,RARA,RB1,RBM1,REL,RET,RICTOR,
RNF43,ROS1,RPTOR,SDHA,SDHB,SDHC,SDHD,SETD2,SF3B1,
SGK1,SMAD4,SMARCA4,SMARCB1,SMO,SNCAIP,SOCS1,SOX2,
SOX9,SPEN,SPOP,SRC,STAG2,STAT3,STK11,SUFU,SYK,
TBX3,TEK,TET2,TGFBR2,TIPARP,TNFAIP3,TNFRSF14,TP53,TSC1,
TSC2,TYRO3,U2AF1,VEGFA,VHL,WHSC1(MMSET),WHSC1L1,WT1,XPO1,
XRCC2,ZNF217,ZNF703 |
| select rearrangements |
ALK,BCL2,BCR,BARF,BRCA1,BRCA2,CD74,EGFR,ETV4,
ETV5,ETV6,EWSR1,EZR,FGFR1,FGFR2,FGFR3,KIT,KM2A(MLL),
MSH2,MYB,MYC,NOTCH2,NTRK1,NTRK2,NUTM1,PDGFRA,RAF1,
RARA,RET,ROS1,RSPO2,SDC4,SLC34A2,TERC,TERT(promoter only),
TMPRSS2 |
| Removed genes |
ABL2,ARID1B,ARID2,BLM,CHD2,CHD4,CRLF2,CYLD,DICER1,
EPHA5,EPHA7,ETV1,FANCD2,FNCE,FANCF,FAT1,FLT4,FOXP1,
FRS2,GATAA,GATA2,GLI1,GPR124,GRIN2A,HP9OAA1,IL7R,INHBA,
KMT2C,LMO1,LRP1B,LZTR1,MAGI2,MYST3,NSD1,NUP93,PAK3,
PIK3CG,PLCG2,PREX2,PRKDC,PRSS8,RAD50,RANBP2,RUNX1,RUNX1T1,
SLIT2,SMAD3,SOX10,SPTA1,STAT4,TAF1,TOP1,TOP2A,TSHR,
WiSP3,ZBTB2 |
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